setsApp: Set operations for Cytoscape nodes and edges

John H. Morris*, Allan Wu, Nadezhda T. Doncheva, Mario Albrecht, Thomas E. Ferrin

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

Abstract

setsApp (http://apps.cytoscape.org/apps/setsapp) is a relatively simple Cytoscape 3 app for users to handle groups of nodes and/or edges. It supports several important biological workflows and enables various set operations. setsApp provides basic tools to create sets of nodes or edges, import or export sets, and perform standard set operations (union, difference, intersection) on those sets. The sets functionality is also exposed to users and app developers in the form of a set of commands that can be used for scripting purposes or integrated in other Cytoscape apps.
Original languageEnglish
Article number149
Number of pages11
JournalFaculty of 1000 Research
Volume3
DOIs
Publication statusPublished - 2014

Fields of Expertise

  • Human- & Biotechnology

Treatment code (Nähere Zuordnung)

  • Basic - Fundamental (Grundlagenforschung)

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