Step-by-step pre-processing of 3D SEM images of neurons

Snjezana Radulovic; L. Chalet; Benjamin Gottschalk; Stefan Wernitznig; Armin Zankel; Gerd Leitinger

Step-by-step pre-processing of 3D SEM images of neurons

Snjezana Radulovic, L. Chalet, Benjamin Gottschalk, Stefan Wernitznig, Armin Zankel, Gerd Leitinger

Institute of Electron Microscopy and Nanoanalysis (5190)

Research output: Chapter in Book/Report/Conference proceeding › Conference paper

Abstract

Traditionally, neuron reconstructions from serial EM micrographs and synapses localizations are done manually, which is extremely time consuming. Currently used, semi-automatic selection tools for segmenting are faster compared to manual selection. In order for those tools to work properly, prior to segmentation, noise reduction is necessary, while keeping membrane integrity and structural features of synapses preserved at the same time.

Original language	English
Title of host publication	MC 2023 Microscopy Conference
Chapter	LS4.P004
Pages	348
Publication status	Published - 2023
Event	Microscopy Conference 2023: MC 2023 - Damstadt, Germany Duration: 26 Feb 2023 → 2 Mar 2023 https://www.microscopy-conference.de/

Conference

Conference	Microscopy Conference 2023
Abbreviated title	MC 2023
Country/Territory	Germany
City	Damstadt
Period	26/02/23 → 2/03/23
Internet address	https://www.microscopy-conference.de/

ASJC Scopus subject areas

General Materials Science

Fields of Expertise

Advanced Materials Science

Treatment code (Nähere Zuordnung)

Basic - Fundamental (Grundlagenforschung)

Cite this

@inproceedings{6dbb10f5d35f47b4994a3851f45d60e3,

title = "Step-by-step pre-processing of 3D SEM images of neurons",

abstract = "Traditionally, neuron reconstructions from serial EM micrographs and synapses localizations are done manually, which is extremely time consuming. Currently used, semi-automatic selection tools for segmenting are faster compared to manual selection. In order for those tools to work properly, prior to segmentation, noise reduction is necessary, while keeping membrane integrity and structural features of synapses preserved at the same time.",

author = "Snjezana Radulovic and L. Chalet and Benjamin Gottschalk and Stefan Wernitznig and Armin Zankel and Gerd Leitinger",

year = "2023",

language = "English",

pages = "348",

booktitle = "MC 2023 Microscopy Conference",

note = "Microscopy Conference 2023 : MC 2023, MC 2023 ; Conference date: 26-02-2023 Through 02-03-2023",

url = "https://www.microscopy-conference.de/",

}

TY - GEN

T1 - Step-by-step pre-processing of 3D SEM images of neurons

AU - Radulovic, Snjezana

AU - Chalet, L.

AU - Gottschalk, Benjamin

AU - Wernitznig, Stefan

AU - Zankel, Armin

AU - Leitinger, Gerd

PY - 2023

Y1 - 2023

N2 - Traditionally, neuron reconstructions from serial EM micrographs and synapses localizations are done manually, which is extremely time consuming. Currently used, semi-automatic selection tools for segmenting are faster compared to manual selection. In order for those tools to work properly, prior to segmentation, noise reduction is necessary, while keeping membrane integrity and structural features of synapses preserved at the same time.

AB - Traditionally, neuron reconstructions from serial EM micrographs and synapses localizations are done manually, which is extremely time consuming. Currently used, semi-automatic selection tools for segmenting are faster compared to manual selection. In order for those tools to work properly, prior to segmentation, noise reduction is necessary, while keeping membrane integrity and structural features of synapses preserved at the same time.

M3 - Conference paper

SP - 348

BT - MC 2023 Microscopy Conference

T2 - Microscopy Conference 2023

Y2 - 26 February 2023 through 2 March 2023

ER -

Step-by-step pre-processing of 3D SEM images of neurons

Abstract

Conference

ASJC Scopus subject areas

Fields of Expertise

Treatment code (Nähere Zuordnung)

Fingerprint

Cite this