Endophytes: structural and functional diversity and biotechnological applications in control of plant pathogens

Endophytes are an interesting group of plant-associated bacteria that live inside plants and show neutral or beneficial interaction with their host plants. The structure of bacterial communities in endophytic microenvironments of important crops (different cultivars of potato, lettuce, and sugar beet) and native plants (different bryophyte species) was analyzed by a multiphasic approach at different field sites in Europe. Interestingly, results of the cultivation-independent approaches using Single-Strand Conformation Polymorphism (SSCP) and/or Terminal Restriction Fragments Length Polymorphism (T-RFLP) of 16S rRNA genes amplified by universal as well as group-specific and functional primers revealed a high diversity and specificity of endophytic bacterial communities. The antagonistic potential of endophytic bacteria, which was determined by screening for in vitro antagonism against different pathogens (bacteria, fungi, protists, and nematodes) ranged from 5 to 43 %. An impressive, phylogenetically diverse spectrum of antagonistic strains was found. The indigenous antagonistic potential of endophytic bacteria was influenced by the plant genotype and developmental stage, the internal microenvironment, and the soil type. A screening strategy for biocontrol strains resulted in the selection of promising candidates. These strains were evaluated in greenhouse and field trials regarding their efficiency to control pathogens under in situ conditions. One product (RhizoStar®) on the basis of serratia plymuthica HRO-C48 to control Verticillium wilt on different host plants was developed. For other promising candidates like Pseudomonas trivialis 3Re2-7 …